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Tom Lukas Kaufmann

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Technische Universität Berlin
Machine Learning / Intelligent Data Analysis (IDA)

Marchstraße 23, 10587 Berlin
https://www.tu.berlin/en/ml

Tom Kaufmann BIFOLD researcher
© Kaufmann

Tom Lukas Kaufmann

Doctoral Researcher

Tom L. Kaufmann is a doctoral researcher affiliated with BIFOLD, the Max Delbrück Center for Molecular Medicine and the CompCancer graduate school. Prior to his PhD, he studied physics at Heidelberg University with a one year stay at University College London and was supported by the Studienstiftung des Deutschen Volkes throughout his studies.
 

  • Cancer Evolution
  • Tumor Heterogeneity
  • Simulations of Cancer Cells
  • Latent Space Representations
     

Xiaoxi Pan, Khalid AbdulJabbar, Jose Coelho-Lima, Anca-Ioana Grapa, Hanyun Zhang, Alvin Ho Kwan Cheung, Juvenal Baena, Takahiro Karasaki, Claire Rachel Wilson, Marco Sereno, Selvaraju Veeriah, Sarah J. Aitken, Allan Hackshaw, Andrew G. Nicholson, Mariam Jamal-Hanjani, TRACERx Consortium, Charles Swanton, Yinyin Yuan, John Le Quesne & David A. Moore

The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma

January 10 , 2024
https://doi.org/10.1038/s43018-023-00694-w

Thomas B. K. Watkins, Emma C. Colliver, Matthew R. Huska, Tom L. Kaufmann, Emilia L. Lim, Cody B. Duncan, Kerstin Haase, Peter Van Loo, Charles Swanton, Nicholas McGranahan, Roland F. Schwarz

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity

October 23 , 2023
https://doi.org/10.1371/journal.pcbi.1011379

Tom L. Kaufmann, Marina Petkovic, Thomas B. K. Watkins, Emma C. Colliver, Sofya Laskina, Nisha Thapa, Darlan C. Minussi, Nicholas Navin, Charles Swanton, Peter Van Loo, Kerstin Haase, Maxime Tarabichi, Roland F. Schwarz

MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution

November 14 , 2022
https://doi.org/10.1186/s13059-022-02794-9

Tom L. Kaufmann, Marina Petkovic, Thomas B. K. Watkins, Emma C. Colliver, Sofya Laskina, Nisha Thapa, Darlan C. Minussi, Nicholas Navin, Charles Swanton, Peter Van Loo, Kerstin Haase, Maxime Tarabichi, Roland F. Schwarz

Refphase: Multi-sample reference phasing reveals haplotype-specific copy number heterogeneity

November 14 , 2022
https://doi.org/10.1186%2Fs13059-022-02794-9